Production-Grade Software for Production-Scale Bioinformatics
We build, scale, and maintain the production-grade software that powers bioinformatics, from pipeline engineering and workflow orchestration to multi-omic analytics, AI-driven interpretation, and clinical reporting. For organizations where bioinformatics isn't just research tooling but operational infrastructure, we bring the engineering depth to make it reliable, scalable, and ready for what's next.
Bioinformatics Expertise Across Omic Modalities
We engineer production-grade bioinformatics software across multi-omic spectrum, pipelines, platforms, data infrastructure, and AI.
Genomics (WES & WGS)
Production pipelines for whole exome and whole genome sequencing, alignment, variant calling (SNVs, indels, CNVs, structural variants), annotation, and ACMG classification across germline and somatic workflows.
RNA-Seq / Transcriptomics
Bulk and single-cell RNA-Seq pipelines for differential gene expression, transcript quantification, fusion detection, and alternative splicing analysis.
Targeted Gene Panels
High-throughput pipeline engineering for oncology, hereditary, cardiac, PGx, and custom panels. Panel-specific QC thresholds, interpretation logic, and automated clinical report generation.
Proteomics
Software platforms for proteomics, peptide identification, protein quantification, post-translational modification analysis, and interaction mapping.
Liquid Biopsy / cfDNA
Specialized pipelines for cell-free DNA, ctDNA detection, tumor fraction estimation, minimal residual disease monitoring, and early cancer detection.
Pharmacogenomics (PGx)
End-to-end PGx pipelines, star allele calling, diplotype assignment, drug-gene interaction mapping (CPIC, PharmGKB), and clinical phenotype prediction.
Tech Stack
Pipelines
Nextflow
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WDL
GATK
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Docker
Apptainer
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Cloud & Infra
GCP
Azure
Kubernetes
Terraform
AWS
Data & Analytics
Snowflake
Databricks
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Amazon Athena
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Apache Spark
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Airflow
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dbt
Interoperability
HL7 v2
FHIR R4
Mirth Connect
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Epic
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Cerner
Application Stack
Java
Dot Net
React
Angular
Bioinformatics Across Sectors
From drug target identification to clinical variant interpretation, we serve the organizations building production bioinformatics infrastructure across these sectors.
Clinical Diagnostics & Genetic Testing
Labs and health systems running clinical-grade sequencing programs, hereditary cancer panels, pharmacogenomics, carrier screening, rare disease, and whole genome sequencing.
Precision Medicine
Organizations delivering personalized treatment recommendations based on a patient's molecular profile.
Pharmaceutical & Drug Discovery
Pharma and biotech companies using bioinformatics for target identification, lead optimization, biomarker discovery, and companion diagnostics development.
Biotechnology & Genomics
Genomics companies, sequencing providers, and biotech organizations building bioinformatics products and services.
Contract Research Organizations (CROs)
CROs running bioinformatics analysis on behalf of sponsors across multiple study types and omic modalities.
Academic Medical Centers & Research Hospitals
Institutions running translational research programs alongside clinical genomics services.
Population Genomics & Public Health
Large-scale sequencing programs and biobanks generating population-level genomic data.
Solutions We Deliver
We engineer the full bioinformatics software stack, from raw data processing to clinical decision support.
Pipeline Engineering & Operations
Bioinformatics Pipeline Development
We build production-grade pipelines for WES, WGS, RNA-Seq, targeted gene panels, methylation arrays, liquid biopsy, single-cell, and other assay types.
Pipeline Orchestration
We engineer the orchestration layer that runs your pipelines at scale, Nextflow, WDL, Snakemake, or custom workflow engines. We automate your workflows to run across cloud or on-prem HPC, so your pipelines run without manual intervention.
Pipeline Operations
Your pipelines need to run thousands of samples a week without breaking. We build auto-scaling execution engines, automated QC gates, intelligent failure detection and retry logic, and observability dashboards that give your ops team real-time visibility into run status.
Pipeline Maintenance
We handle long-term pipeline maintenance, version management, validation workflows, and production upgrades so your pipelines stay current without risking clinical stability.
Data, Analytics & AI
Genomic Data Engineering
Your bioinformatics data is only as useful as the infrastructure it sits on. We build genomic data lakes, warehouses, ETL pipelines, and knowledge management systems that unify clinical, research, and operational data into a single governed layer.
AI-Powered Tertiary Analysis
Manual variant curation doesn't scale. We build AI-driven tertiary analysis platforms that accelerate variant classification, reclassify VUS from historical data, and surface clinically actionable findings. Producing explainable, auditable outputs your clinical teams can stand behind.
ML Model Training on Proprietary Omic Data
Your proprietary omic data is your competitive advantage. We build the end-to-end ML infrastructure to unlock it, data curation, labeling workflows, feature engineering, model training, versioning, and clinical validation pipelines.
Clinical Reporting & Decision Support Systems
We build the last mile of bioinformatics, clinical report generation systems, pharmacogenomics decision support, and analytics dashboards that translate pipeline outputs into actionable clinical information.
Infrastructure, Integration & Automation
Bioinformatics Workflow Platforms
We build end-to-end digital platforms that manage the full bioinformatics workflow, from sample accessioning and pipeline triggering to QC review, interpretation, reporting, and delivery.
EHR & LIMS Integration
We build HL7 v2, FHIR R4, and Mirth Connect integrations that connect your pipelines and reporting platforms to Epic, Cerner, and other EHR systems, and bidirectional LIMS connectivity that automates sample tracking, pipeline triggering, and result delivery.
Sequencer-to-Pipeline Automation
We automate the data flow from sequencer output to pipeline execution, with real-time monitoring, automated data validation, format conversion, and hands-free pipeline triggering.
Cloud Infrastructure & DevOps for Bioinformatics
We build cloud-native infrastructure on AWS, GCP, and Azure, with Kubernetes orchestration, Terraform-based IaC, spot instance optimization, and on-prem HPC integration.
